| +&+ | Poseidon.ServerClient |
| A1240K | Poseidon.ColumnTypes, Poseidon.Janno |
| AccessionID | Poseidon.SequencingSource |
| AccessionIDRun | |
| 1 (Type/Class) | Poseidon.SequencingSource |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| AccessionIDSample | |
| 1 (Type/Class) | Poseidon.SequencingSource |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| AccessionIDStudy | |
| 1 (Type/Class) | Poseidon.SequencingSource |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| AddJannoColAll | Poseidon.ServerClient |
| AddJannoColList | Poseidon.ServerClient |
| AddJannoColSpec | Poseidon.ServerClient |
| AllJannoColumns | Poseidon.CLI.Jannocoalesce |
| ApiReturnData | Poseidon.ServerClient |
| ApiReturnExtIndividualInfo | Poseidon.ServerClient |
| ApiReturnGroupInfo | Poseidon.ServerClient |
| ApiReturnPackageInfo | Poseidon.ServerClient |
| ArborAncestralPlus | Poseidon.ColumnTypes, Poseidon.Janno |
| ArborComplete | Poseidon.ColumnTypes, Poseidon.Janno |
| ArborPrimePlus | Poseidon.ColumnTypes, Poseidon.Janno |
| ArchiveEndpoint | |
| 1 (Type/Class) | Poseidon.ServerClient |
| 2 (Data Constructor) | Poseidon.ServerClient |
| asVersion | Poseidon.PoseidonVersion |
| avg | Poseidon.MathHelpers |
| BibEntry | |
| 1 (Type/Class) | Poseidon.BibFile |
| 2 (Data Constructor) | Poseidon.BibFile |
| bibEntryFields | Poseidon.BibFile |
| bibEntryId | Poseidon.BibFile |
| bibEntryType | Poseidon.BibFile |
| BibTeX | Poseidon.BibFile |
| C14 | Poseidon.ColumnTypes, Poseidon.Janno |
| CharCount | Poseidon.Utils |
| CharInf | Poseidon.Utils |
| checkAtLeastOnePoseidonID | Poseidon.SequencingSource |
| checkFile | Poseidon.Utils |
| checkIfAllEntitiesExist | Poseidon.EntityTypes |
| checkRunsUnique | Poseidon.SequencingSource |
| ChecksumAll | Poseidon.CLI.Rectify |
| ChecksumNone | Poseidon.CLI.Rectify |
| ChecksumsDetail | Poseidon.CLI.Rectify |
| ChecksumsToRectify | Poseidon.CLI.Rectify |
| ChronicleOptions | |
| 1 (Type/Class) | Poseidon.CLI.Chronicle |
| 2 (Data Constructor) | Poseidon.CLI.Chronicle |
| chroniclePackages | Poseidon.Chronicle |
| ChronOperation | Poseidon.CLI.Chronicle |
| cliArchiveBaseDirs | Poseidon.CLI.Serve |
| cliCertFiles | Poseidon.CLI.Serve |
| cliIgnoreChecksums | Poseidon.CLI.Serve |
| cliPort | Poseidon.CLI.Serve |
| cliZipDir | Poseidon.CLI.Serve |
| CoalesceJannoColumnSpec | Poseidon.CLI.Jannocoalesce |
| conclude | Poseidon.CLI.Validate |
| Contextual | Poseidon.ColumnTypes, Poseidon.Janno |
| contributorEmail | Poseidon.Contributor |
| contributorName | Poseidon.Contributor |
| contributorORCID | Poseidon.Contributor |
| ContributorSpec | |
| 1 (Type/Class) | Poseidon.Contributor |
| 2 (Data Constructor) | Poseidon.Contributor |
| contributorSpecParser | Poseidon.Contributor |
| convertGenoTo | Poseidon.CLI.Genoconvert |
| copyDirectory | Poseidon.CLI.Timetravel |
| CounterCopied | Poseidon.CLI.Jannocoalesce |
| CounterMismatches | Poseidon.CLI.Jannocoalesce |
| countPresence | Poseidon.CLI.Survey |
| CreateChron | Poseidon.CLI.Chronicle |
| createMinimalJanno | Poseidon.Janno |
| createMinimalSample | Poseidon.Janno |
| CsvNamedRecord | |
| 1 (Type/Class) | Poseidon.Janno |
| 2 (Data Constructor) | Poseidon.Janno |
| decodingOptions | Poseidon.Janno |
| DefaultLog | Poseidon.Utils |
| defaultPackageReadOptions | Poseidon.Package |
| determineNonExistentEntities | Poseidon.EntityTypes |
| determinePackageOutName | Poseidon.Utils |
| determinePackageState | Poseidon.CLI.Fetch |
| determineRelevantPackages | Poseidon.EntityTypes |
| Diploid | Poseidon.ColumnTypes, Poseidon.Janno |
| downloadAndUnzipPackage | Poseidon.CLI.Fetch |
| downloadPackage | Poseidon.CLI.Fetch |
| DS | Poseidon.ColumnTypes, Poseidon.Janno |
| dummyBibEntry | Poseidon.BibFile |
| encodingOptions | Poseidon.Janno |
| EntitiesDirect | Poseidon.EntityTypes |
| EntitiesFromFile | Poseidon.EntityTypes |
| EntitiesList | Poseidon.EntityTypes |
| entitiesListP | Poseidon.EntityTypes |
| EntityInput | Poseidon.EntityTypes |
| EntitySpec | Poseidon.EntityTypes |
| entitySpecParser | Poseidon.EntityTypes |
| Env | |
| 1 (Type/Class) | Poseidon.Utils |
| 2 (Data Constructor) | Poseidon.Utils |
| envErrorLength | Poseidon.Utils |
| envInputPlinkMode | Poseidon.Utils |
| envLogAction | Poseidon.Utils |
| EqualLocalRemote | Poseidon.CLI.Fetch |
| ErrorLength | Poseidon.Utils |
| Exclude | Poseidon.EntityTypes |
| ExcludeJannoColumns | Poseidon.CLI.Jannocoalesce |
| explicitNA | Poseidon.Janno |
| ExtendedIndividualInfo | |
| 1 (Type/Class) | Poseidon.ServerClient |
| 2 (Data Constructor) | Poseidon.ServerClient |
| extIndInfo2IndInfoCollection | Poseidon.ServerClient |
| extIndInfoAddCols | Poseidon.ServerClient |
| extIndInfoGroups | Poseidon.ServerClient |
| extIndInfoIsLatest | Poseidon.ServerClient |
| extIndInfoName | Poseidon.ServerClient |
| extIndInfoPac | Poseidon.ServerClient |
| Female | Poseidon.Janno |
| FetchOptions | |
| 1 (Type/Class) | Poseidon.CLI.Fetch |
| 2 (Data Constructor) | Poseidon.CLI.Fetch |
| fillMissingSnpSets | Poseidon.CLI.Forge |
| filterBibEntries | Poseidon.CLI.Forge |
| filterLookup | Poseidon.Janno |
| filterLookupOptional | Poseidon.Janno |
| filterSeqSourceRows | Poseidon.CLI.Forge |
| filterToRelevantPackages | Poseidon.Package |
| findAllPoseidonYmlFiles | Poseidon.Package |
| First | Poseidon.ColumnTypes, Poseidon.Janno |
| ForgeOptions | |
| 1 (Type/Class) | Poseidon.CLI.Forge |
| 2 (Data Constructor) | Poseidon.CLI.Forge |
| ForgeOutMode | Poseidon.CLI.Forge |
| frequency | Poseidon.CLI.Summarise |
| GeneticSex | |
| 1 (Type/Class) | Poseidon.ColumnTypes, Poseidon.Janno |
| 2 (Data Constructor) | Poseidon.ColumnTypes, Poseidon.Janno |
| GenoconvertOptions | |
| 1 (Type/Class) | Poseidon.CLI.Genoconvert |
| 2 (Data Constructor) | Poseidon.CLI.Genoconvert |
| GenoDataSource | Poseidon.GenotypeData |
| GenoDirect | Poseidon.GenotypeData |
| GenoOut | Poseidon.CLI.Forge |
| GenotypeDataSpec | |
| 1 (Type/Class) | Poseidon.GenotypeData |
| 2 (Data Constructor) | Poseidon.GenotypeData |
| GenotypeEigenstrat | Poseidon.GenotypeData |
| GenotypeFileSpec | Poseidon.GenotypeData |
| genotypeFileSpec | Poseidon.GenotypeData |
| GenotypePlink | Poseidon.GenotypeData |
| genotypeSnpSet | Poseidon.GenotypeData |
| GenotypeVCF | Poseidon.GenotypeData |
| getAllGroupInfo | Poseidon.Package |
| getChecksum | Poseidon.Utils |
| getConsensusSnpEntry | Poseidon.GenotypeData |
| getCsvNR | Poseidon.Janno |
| getExtendedIndividualInfo | Poseidon.Package |
| getGenoDirect | Poseidon.GenotypeData |
| getGitCommitHash | Poseidon.Chronicle |
| getJannoRows | Poseidon.Janno |
| getJannoRowsFromPac | Poseidon.Package |
| getJointGenotypeData | Poseidon.Package |
| getJointIndividualInfo | Poseidon.Package |
| getJointJanno | Poseidon.Package |
| getKeyFromJanno | Poseidon.CLI.Jannocoalesce |
| getListColumn | Poseidon.Janno |
| getMaybeListColumn | Poseidon.Janno |
| getPacBaseDir | Poseidon.GenotypeData |
| getPackageVersion | Poseidon.Chronicle |
| getPacName | Poseidon.EntityTypes |
| getPacVersion | Poseidon.EntityTypes |
| getRunAccession | Poseidon.SequencingSource |
| getSampleAccession | Poseidon.SequencingSource |
| getSeqSourceRowList | Poseidon.SequencingSource |
| getStudyAccession | Poseidon.SequencingSource |
| gIsLatest | Poseidon.ServerClient |
| gitCheckout | Poseidon.CLI.Timetravel |
| gName | Poseidon.ServerClient |
| gNrIndividuals | Poseidon.ServerClient |
| gPackage | Poseidon.ServerClient |
| Group | Poseidon.EntityTypes |
| GroupInfo | |
| 1 (Type/Class) | Poseidon.ServerClient |
| 2 (Data Constructor) | Poseidon.ServerClient |
| GroupName | |
| 1 (Type/Class) | Poseidon.ColumnTypes, Poseidon.Janno |
| 2 (Data Constructor) | Poseidon.ColumnTypes, Poseidon.Janno |
| Half | Poseidon.ColumnTypes, Poseidon.Janno |
| handlePackageByState | Poseidon.CLI.Fetch |
| Haploid | Poseidon.ColumnTypes, Poseidon.Janno |
| HasNameAndVersion | Poseidon.EntityTypes |
| hasVersion | Poseidon.EntityTypes |
| Identical | Poseidon.ColumnTypes, Poseidon.Janno |
| Include | Poseidon.EntityTypes |
| IncludeJannoColumns | Poseidon.CLI.Jannocoalesce |
| Ind | Poseidon.EntityTypes |
| indInfoConformsToEntitySpecs | Poseidon.EntityTypes |
| indInfoGroups | Poseidon.EntityTypes |
| indInfoName | Poseidon.EntityTypes |
| indInfoPac | Poseidon.EntityTypes |
| IndividualInfo | |
| 1 (Type/Class) | Poseidon.EntityTypes |
| 2 (Data Constructor) | Poseidon.EntityTypes |
| IndividualInfoCollection | Poseidon.EntityTypes |
| InitOptions | |
| 1 (Type/Class) | Poseidon.CLI.Init |
| 2 (Data Constructor) | Poseidon.CLI.Init |
| INSDCAnalysis | |
| 1 (Data Constructor) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| INSDCBioSample | |
| 1 (Data Constructor) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| INSDCExperiment | |
| 1 (Data Constructor) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| INSDCProject | |
| 1 (Data Constructor) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| INSDCRun | |
| 1 (Data Constructor) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| INSDCSample | |
| 1 (Data Constructor) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| INSDCStudy | |
| 1 (Data Constructor) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| isLatestInCollection | Poseidon.EntityTypes |
| isMD5Hash | Poseidon.SequencingSource |
| jAdditionalColumns | Poseidon.Janno |
| jAlternativeIDs | Poseidon.Janno |
| JannoAlternativeID | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoCaptureType | Poseidon.ColumnTypes, Poseidon.Janno |
| JannoCoalesceOptions | |
| 1 (Type/Class) | Poseidon.CLI.Jannocoalesce |
| 2 (Data Constructor) | Poseidon.CLI.Jannocoalesce |
| JannoCollectionID | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoComment | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoContamination | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoContaminationErr | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoContaminationMeas | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoContaminationNote | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoCountry | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoCountryISO | |
| 1 (Type/Class) | Poseidon.ColumnTypes, Poseidon.Janno |
| 2 (Data Constructor) | Poseidon.ColumnTypes, Poseidon.Janno |
| JannoCoverageOnTargets | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoDamage | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoDataPreparationPipelineURL | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoDateBCADMedian | |
| 1 (Type/Class) | Poseidon.ColumnTypes, Poseidon.Janno |
| 2 (Data Constructor) | Poseidon.ColumnTypes, Poseidon.Janno |
| JannoDateBCADStart | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoDateBCADStop | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoDateC14Labnr | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoDateC14UncalBP | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoDateC14UncalBPErr | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoDateNote | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoDateType | Poseidon.ColumnTypes, Poseidon.Janno |
| JannoEndogenous | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoGeneticSourceAccessionID | Poseidon.ColumnTypes |
| JannoGenotypePloidy | Poseidon.ColumnTypes, Poseidon.Janno |
| jannoHeaderString | Poseidon.Janno |
| JannoKeyword | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoLatitude | |
| 1 (Type/Class) | Poseidon.ColumnTypes, Poseidon.Janno |
| 2 (Data Constructor) | Poseidon.ColumnTypes, Poseidon.Janno |
| JannoLibraryBuilt | Poseidon.ColumnTypes, Poseidon.Janno |
| JannoLibraryName | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoLocation | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoLongitude | |
| 1 (Type/Class) | Poseidon.ColumnTypes, Poseidon.Janno |
| 2 (Data Constructor) | Poseidon.ColumnTypes, Poseidon.Janno |
| JannoMTHaplogroup | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoNrLibraries | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoNrSNPs | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoPrimaryContact | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoPublication | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoRelationDegree | Poseidon.ColumnTypes, Poseidon.Janno |
| JannoRelationNote | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoRelationTo | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoRelationType | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoRow | |
| 1 (Type/Class) | Poseidon.Janno |
| 2 (Data Constructor) | Poseidon.Janno |
| JannoRows | |
| 1 (Type/Class) | Poseidon.Janno |
| 2 (Data Constructor) | Poseidon.Janno |
| jannoRows2EigenstratIndEntries | Poseidon.Janno |
| JannoSite | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoSourceBaseDirs | Poseidon.CLI.Jannocoalesce |
| JannoSourceSingle | Poseidon.CLI.Jannocoalesce |
| JannoSourceSpec | Poseidon.CLI.Jannocoalesce |
| JannoSourceTissue | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| JannoStringList | Poseidon.Janno |
| JannoUDG | Poseidon.ColumnTypes, Poseidon.Janno |
| JannoYHaplogroup | |
| 1 (Type/Class) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.ColumnTypes |
| jCaptureType | Poseidon.Janno |
| jCollectionID | Poseidon.Janno |
| jComments | Poseidon.Janno |
| jContamination | Poseidon.Janno |
| jContaminationErr | Poseidon.Janno |
| jContaminationMeas | Poseidon.Janno |
| jContaminationNote | Poseidon.Janno |
| jCountry | Poseidon.Janno |
| jCountryISO | Poseidon.Janno |
| jCoverageOnTargets | Poseidon.Janno |
| jDamage | Poseidon.Janno |
| jDataPreparationPipelineURL | Poseidon.Janno |
| jDateBCADMedian | Poseidon.Janno |
| jDateBCADStart | Poseidon.Janno |
| jDateBCADStop | Poseidon.Janno |
| jDateC14Labnr | Poseidon.Janno |
| jDateC14UncalBP | Poseidon.Janno |
| jDateC14UncalBPErr | Poseidon.Janno |
| jDateNote | Poseidon.Janno |
| jDateType | Poseidon.Janno |
| jEndogenous | Poseidon.Janno |
| jGeneticSex | Poseidon.Janno |
| jGeneticSourceAccessionIDs | Poseidon.Janno |
| jGenotypePloidy | Poseidon.Janno |
| jGroupName | Poseidon.Janno |
| jKeywords | Poseidon.Janno |
| jLatitude | Poseidon.Janno |
| jLibraryBuilt | Poseidon.Janno |
| jLibraryNames | Poseidon.Janno |
| jLocation | Poseidon.Janno |
| jLongitude | Poseidon.Janno |
| jMTHaplogroup | Poseidon.Janno |
| jNrLibraries | Poseidon.Janno |
| jNrSNPs | Poseidon.Janno |
| joinEntries | Poseidon.GenotypeData |
| jPoseidonID | Poseidon.Janno |
| jPrimaryContact | Poseidon.Janno |
| jPublication | Poseidon.Janno |
| jRelationDegree | Poseidon.Janno |
| jRelationNote | Poseidon.Janno |
| jRelationTo | Poseidon.Janno |
| jRelationType | Poseidon.Janno |
| jSite | Poseidon.Janno |
| jSourceTissue | Poseidon.Janno |
| jUDG | Poseidon.Janno |
| JURI | |
| 1 (Type/Class) | Poseidon.SequencingSource |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| jYHaplogroup | Poseidon.Janno |
| latestPoseidonVersion | Poseidon.PoseidonVersion |
| ListColumn | |
| 1 (Type/Class) | Poseidon.Janno |
| 2 (Data Constructor) | Poseidon.Janno |
| ListEntity | Poseidon.CLI.List |
| ListGroups | Poseidon.CLI.List |
| ListIndividuals | Poseidon.CLI.List |
| ListOptions | |
| 1 (Type/Class) | Poseidon.CLI.List |
| 2 (Data Constructor) | Poseidon.CLI.List |
| ListPackages | Poseidon.CLI.List |
| loadGenotypeData | Poseidon.GenotypeData |
| loadIndividuals | Poseidon.GenotypeData |
| LogA | Poseidon.Utils |
| logDebug | Poseidon.Utils |
| logError | Poseidon.Utils |
| logInfo | Poseidon.Utils |
| LogMode | Poseidon.Utils |
| logWarning | Poseidon.Utils |
| logWithEnv | Poseidon.Utils |
| Major | Poseidon.Version |
| make | Poseidon.ColumnTypesUtils |
| Makeable | Poseidon.ColumnTypesUtils |
| makeAccessionID | Poseidon.SequencingSource |
| makeAccessionIDRun | Poseidon.SequencingSource |
| makeAccessionIDSample | Poseidon.SequencingSource |
| makeAccessionIDStudy | Poseidon.SequencingSource |
| makeChronicle | Poseidon.Chronicle |
| makeInstances | Poseidon.ColumnTypesUtils |
| makeJURI | Poseidon.SequencingSource |
| makeMD5 | Poseidon.SequencingSource |
| makeNewJannoRows | Poseidon.CLI.Jannocoalesce |
| makePacNameAndVersion | Poseidon.EntityTypes |
| makePseudoPackageFromGenotypeData | Poseidon.Package |
| makeSimpleDate | Poseidon.SequencingSource |
| makeSSFLibraryBuilt | Poseidon.SequencingSource |
| makeSSFUDG | Poseidon.SequencingSource |
| Male | Poseidon.Janno |
| matchWithOptionalStrip | Poseidon.CLI.Jannocoalesce |
| maybeShow | Poseidon.CLI.Summarise |
| maybeShowString | Poseidon.CLI.Summarise |
| MD5 | |
| 1 (Type/Class) | Poseidon.SequencingSource |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| meanAndSdInteger | Poseidon.MathHelpers |
| meanAndSdRoundTo | Poseidon.MathHelpers |
| mergeRow | Poseidon.CLI.Jannocoalesce |
| MinimalOut | Poseidon.CLI.Forge |
| minimalOutputDocu | Poseidon.CLI.OptparseApplicativeParsers |
| minimalRequiredClientVersion | Poseidon.PoseidonVersion |
| Minor | Poseidon.Version |
| Minus | Poseidon.ColumnTypes, Poseidon.Janno |
| Mixed | Poseidon.ColumnTypes, Poseidon.Janno |
| MixedSSDS | Poseidon.ColumnTypes, Poseidon.Janno |
| Modern | Poseidon.ColumnTypes, Poseidon.Janno |
| newMinimalPackageTemplate | Poseidon.Package |
| newPackageTemplate | Poseidon.Package |
| NoLog | Poseidon.Utils |
| noLog | Poseidon.Utils |
| NormalOut | Poseidon.CLI.Forge |
| NotLocal | Poseidon.CLI.Fetch |
| onlyGenoOutputDocu | Poseidon.CLI.OptparseApplicativeParsers |
| ORCID | |
| 1 (Type/Class) | Poseidon.Contributor |
| 2 (Data Constructor) | Poseidon.Contributor |
| Other | Poseidon.ColumnTypes, Poseidon.Janno |
| OtherCapture | Poseidon.ColumnTypes, Poseidon.Janno |
| OtherDegree | Poseidon.ColumnTypes, Poseidon.Janno |
| OtherID | |
| 1 (Data Constructor) | Poseidon.ColumnTypes |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| Pac | Poseidon.EntityTypes |
| PacBaseDir | Poseidon.GenotypeData |
| PackageInfo | |
| 1 (Type/Class) | Poseidon.ServerClient |
| 2 (Data Constructor) | Poseidon.ServerClient |
| PackageIteration | |
| 1 (Type/Class) | Poseidon.Chronicle |
| 2 (Data Constructor) | Poseidon.Chronicle |
| PackageReadOptions | |
| 1 (Type/Class) | Poseidon.Package |
| 2 (Data Constructor) | Poseidon.Package |
| PackageState | Poseidon.CLI.Fetch |
| packagesToPackageInfos | Poseidon.Package |
| PackageVersionUpdate | |
| 1 (Type/Class) | Poseidon.CLI.Rectify |
| 2 (Data Constructor) | Poseidon.CLI.Rectify |
| PacNameAndVersion | |
| 1 (Type/Class) | Poseidon.EntityTypes |
| 2 (Data Constructor) | Poseidon.EntityTypes |
| pacReadOpts | |
| 1 (Function) | Poseidon.CLI.Summarise |
| 2 (Function) | Poseidon.CLI.Forge |
| 3 (Function) | Poseidon.CLI.Fetch |
| 4 (Function) | Poseidon.CLI.Timetravel |
| 5 (Function) | Poseidon.CLI.Chronicle |
| pacStateCommit | Poseidon.Chronicle |
| pacStatePath | Poseidon.Chronicle |
| pacStateTitle | Poseidon.Chronicle |
| pacStateVersion | Poseidon.Chronicle |
| padLeft | Poseidon.Utils |
| padRight | Poseidon.Utils |
| panavName | Poseidon.EntityTypes |
| panavVersion | Poseidon.EntityTypes |
| parseArchiveBasePaths | Poseidon.CLI.OptparseApplicativeParsers |
| parseArchiveEndpoint | Poseidon.CLI.OptparseApplicativeParsers |
| parseBasePath | Poseidon.CLI.OptparseApplicativeParsers |
| parseBasePaths | Poseidon.CLI.OptparseApplicativeParsers |
| parseCertFile | Poseidon.CLI.OptparseApplicativeParsers |
| parseChainFile | Poseidon.CLI.OptparseApplicativeParsers |
| parseChecksumsToRectify | Poseidon.CLI.OptparseApplicativeParsers |
| parseChronOperation | Poseidon.CLI.OptparseApplicativeParsers |
| parseChronOutPath | Poseidon.CLI.OptparseApplicativeParsers |
| parseChronUpdatePath | Poseidon.CLI.OptparseApplicativeParsers |
| parseContributors | Poseidon.CLI.OptparseApplicativeParsers |
| parseCsvParseError | Poseidon.Janno |
| parseDebugMode | Poseidon.CLI.OptparseApplicativeParsers |
| parseErrorLength | Poseidon.CLI.OptparseApplicativeParsers |
| parseFetchEntitiesDirect | Poseidon.CLI.OptparseApplicativeParsers |
| parseFetchEntitiesFromFile | Poseidon.CLI.OptparseApplicativeParsers |
| parseFetchEntityInputs | Poseidon.CLI.OptparseApplicativeParsers |
| parseFileWithEndings | Poseidon.CLI.OptparseApplicativeParsers |
| parseForce | Poseidon.CLI.OptparseApplicativeParsers |
| parseForgeEntitiesDirect | Poseidon.CLI.OptparseApplicativeParsers |
| parseForgeEntitiesFromFile | Poseidon.CLI.OptparseApplicativeParsers |
| parseForgeEntityInputs | Poseidon.CLI.OptparseApplicativeParsers |
| parseForgeOutMode | Poseidon.CLI.OptparseApplicativeParsers |
| parseFullGeno | Poseidon.CLI.OptparseApplicativeParsers |
| parseGenoDataSource | Poseidon.CLI.OptparseApplicativeParsers |
| parseGenoDataSources | Poseidon.CLI.OptparseApplicativeParsers |
| parseGenotypeSNPSet | Poseidon.CLI.OptparseApplicativeParsers |
| parseIgnoreChecksums | Poseidon.CLI.OptparseApplicativeParsers |
| parseIgnoreDuplicates | Poseidon.CLI.OptparseApplicativeParsers |
| parseIgnoreGeno | Poseidon.CLI.OptparseApplicativeParsers |
| parseIgnorePoseidonVersion | Poseidon.CLI.OptparseApplicativeParsers |
| parseInBibFile | Poseidon.CLI.OptparseApplicativeParsers |
| parseInGenoOne | Poseidon.CLI.OptparseApplicativeParsers |
| parseInGenoSep | Poseidon.CLI.OptparseApplicativeParsers |
| parseInGenotypeDataset | Poseidon.CLI.OptparseApplicativeParsers |
| parseInGenoWithoutSNPSet | Poseidon.CLI.OptparseApplicativeParsers |
| parseInJannoFile | Poseidon.CLI.OptparseApplicativeParsers |
| parseInPoseidonYamlFile | Poseidon.CLI.OptparseApplicativeParsers |
| parseInputPlinkPopMode | Poseidon.CLI.OptparseApplicativeParsers |
| parseInSSFile | Poseidon.CLI.OptparseApplicativeParsers |
| parseIntersect | Poseidon.CLI.OptparseApplicativeParsers |
| parseJannocoalIdStripRegex | Poseidon.CLI.OptparseApplicativeParsers |
| parseJannocoalJannoColumns | Poseidon.CLI.OptparseApplicativeParsers |
| parseJannocoalOutSpec | Poseidon.CLI.OptparseApplicativeParsers |
| parseJannocoalOverride | Poseidon.CLI.OptparseApplicativeParsers |
| parseJannocoalSourceKey | Poseidon.CLI.OptparseApplicativeParsers |
| parseJannocoalSourceSpec | Poseidon.CLI.OptparseApplicativeParsers |
| parseJannocoalTargetFile | Poseidon.CLI.OptparseApplicativeParsers |
| parseJannocoalTargetKey | Poseidon.CLI.OptparseApplicativeParsers |
| parseKeyFile | Poseidon.CLI.OptparseApplicativeParsers |
| parseListEntity | Poseidon.CLI.OptparseApplicativeParsers |
| parseLog | Poseidon.CLI.OptparseApplicativeParsers |
| parseLogMode | Poseidon.CLI.OptparseApplicativeParsers |
| parseMaybeArchiveName | Poseidon.CLI.OptparseApplicativeParsers |
| parseMaybeCertFiles | Poseidon.CLI.OptparseApplicativeParsers |
| parseMaybeContributors | Poseidon.CLI.OptparseApplicativeParsers |
| parseMaybeLog | Poseidon.CLI.OptparseApplicativeParsers |
| parseMaybeOutPackageName | Poseidon.CLI.OptparseApplicativeParsers |
| parseMaybeOutPackagePath | Poseidon.CLI.OptparseApplicativeParsers |
| parseMaybePackageVersionUpdate | Poseidon.CLI.OptparseApplicativeParsers |
| parseMaybePoseidonVersion | Poseidon.CLI.OptparseApplicativeParsers |
| parseMaybeSnpFile | Poseidon.CLI.OptparseApplicativeParsers |
| parseMaybeZipDir | Poseidon.CLI.OptparseApplicativeParsers |
| parseMinimalOutputFlag | Poseidon.CLI.OptparseApplicativeParsers |
| parseMinimalOutputSwitch | Poseidon.CLI.OptparseApplicativeParsers |
| parseNoChecksumUpdate | Poseidon.CLI.OptparseApplicativeParsers |
| parseNoExitCode | Poseidon.CLI.OptparseApplicativeParsers |
| parseOnlyLatest | Poseidon.CLI.OptparseApplicativeParsers |
| parseOutGenotypeFormat | Poseidon.CLI.OptparseApplicativeParsers |
| parseOutOnlyGenoFlag | Poseidon.CLI.OptparseApplicativeParsers |
| parseOutPackagePath | Poseidon.CLI.OptparseApplicativeParsers |
| parseOutputOrdered | Poseidon.CLI.OptparseApplicativeParsers |
| parseOutputPlinkPopMode | Poseidon.CLI.OptparseApplicativeParsers |
| parsePackageWise | Poseidon.CLI.OptparseApplicativeParsers |
| parsePort | Poseidon.CLI.OptparseApplicativeParsers |
| parsePreservePymlFlag | Poseidon.CLI.OptparseApplicativeParsers |
| parseRawOutput | Poseidon.CLI.OptparseApplicativeParsers |
| parseRemoteDummy | Poseidon.CLI.OptparseApplicativeParsers |
| parseRemoteURL | Poseidon.CLI.OptparseApplicativeParsers |
| parseRemoveOld | Poseidon.CLI.OptparseApplicativeParsers |
| parseRepoLocation | Poseidon.CLI.OptparseApplicativeParsers |
| parseTestMode | Poseidon.CLI.OptparseApplicativeParsers |
| parseTimetravelChronPath | Poseidon.CLI.OptparseApplicativeParsers |
| parseTimetravelSourcePath | Poseidon.CLI.OptparseApplicativeParsers |
| parseTypeCSV | Poseidon.ColumnTypesUtils |
| parseUpgrade | Poseidon.CLI.OptparseApplicativeParsers |
| parseValidatePlan | Poseidon.CLI.OptparseApplicativeParsers |
| parseVersion | Poseidon.Version |
| parseVersionComponent | Poseidon.CLI.OptparseApplicativeParsers |
| parseZipOut | Poseidon.CLI.OptparseApplicativeParsers |
| paste | Poseidon.CLI.Summarise |
| Patch | Poseidon.Version |
| pDescription | Poseidon.ServerClient |
| pIsLatest | Poseidon.ServerClient |
| pLastModified | Poseidon.ServerClient |
| PlinkPopNameAsBoth | Poseidon.Utils |
| PlinkPopNameAsFamily | Poseidon.Utils |
| PlinkPopNameAsPhenotype | Poseidon.Utils |
| PlinkPopNameMode | Poseidon.Utils |
| Plus | Poseidon.ColumnTypes, Poseidon.Janno |
| pNrIndividuals | Poseidon.ServerClient |
| PoseidonBibTeXException | Poseidon.Utils, Poseidon.Package |
| PoseidonCantPreserveException | Poseidon.Utils, Poseidon.Package |
| PoseidonChronicleException | Poseidon.Utils, Poseidon.Package |
| PoseidonCollectionException | Poseidon.Utils, Poseidon.Package |
| PoseidonCrossFileConsistencyException | Poseidon.Utils, Poseidon.Package |
| PoseidonEmptyForgeException | Poseidon.Utils, Poseidon.Package |
| PoseidonEmptyOutPacNameException | Poseidon.Utils, Poseidon.Package |
| PoseidonEntity | Poseidon.EntityTypes |
| PoseidonException | Poseidon.Utils, Poseidon.Package |
| PoseidonFileChecksumException | Poseidon.Utils, Poseidon.Package |
| PoseidonFileConsistencyException | Poseidon.Utils, Poseidon.Package |
| PoseidonFileExistenceException | Poseidon.Utils, Poseidon.Package |
| PoseidonFileRowException | Poseidon.Utils, Poseidon.Package |
| PoseidonForgeEntitiesException | Poseidon.Utils, Poseidon.Package |
| PoseidonFStatsFormatException | Poseidon.Utils, Poseidon.Package |
| PoseidonGenericException | Poseidon.Utils, Poseidon.Package |
| PoseidonGenotypeException | Poseidon.Utils, Poseidon.Package |
| PoseidonGenotypeExceptionForward | Poseidon.Utils, Poseidon.Package |
| PoseidonGitException | Poseidon.Utils, Poseidon.Package |
| PoseidonHttpExceptionForward | Poseidon.Utils, Poseidon.Package |
| PoseidonIndSearchException | Poseidon.Utils, Poseidon.Package |
| PoseidonIO | Poseidon.Utils |
| PoseidonNewPackageConstructionException | Poseidon.Utils, Poseidon.Package |
| PoseidonPackage | |
| 1 (Type/Class) | Poseidon.Package |
| 2 (Data Constructor) | Poseidon.Package |
| PoseidonPackageChronicle | |
| 1 (Type/Class) | Poseidon.Chronicle |
| 2 (Data Constructor) | Poseidon.Chronicle |
| PoseidonPackageException | Poseidon.Utils, Poseidon.Package |
| PoseidonPackageMissingVersionException | Poseidon.Utils, Poseidon.Package |
| PoseidonPackageVersionException | Poseidon.Utils, Poseidon.Package |
| PoseidonPoseidonEntityParsingException | Poseidon.Utils, Poseidon.Package |
| PoseidonRemoteJSONParsingException | Poseidon.Utils, Poseidon.Package |
| PoseidonServerCommunicationException | Poseidon.Utils, Poseidon.Package |
| PoseidonUnequalBaseDirException | Poseidon.Utils, Poseidon.Package |
| PoseidonUnzipException | Poseidon.Utils, Poseidon.Package |
| PoseidonYamlParseException | Poseidon.Utils, Poseidon.Package |
| PoseidonYamlStruct | |
| 1 (Type/Class) | Poseidon.Package |
| 2 (Data Constructor) | Poseidon.Package |
| posPacBaseDir | Poseidon.Package |
| posPacBib | Poseidon.Package |
| posPacBibFile | Poseidon.Package |
| posPacBibFileChkSum | Poseidon.Package |
| posPacChangelogFile | Poseidon.Package |
| posPacContributor | Poseidon.Package |
| posPacDescription | Poseidon.Package |
| posPacGenotypeData | Poseidon.Package |
| posPacJanno | Poseidon.Package |
| posPacJannoFile | Poseidon.Package |
| posPacJannoFileChkSum | Poseidon.Package |
| posPacLastModified | Poseidon.Package |
| posPacNameAndVersion | Poseidon.Package |
| posPacPoseidonVersion | Poseidon.Package |
| posPacReadmeFile | Poseidon.Package |
| posPacSeqSource | Poseidon.Package |
| posPacSeqSourceFile | Poseidon.Package |
| posPacSeqSourceFileChkSum | Poseidon.Package |
| pPac | Poseidon.ServerClient |
| pPosVersion | Poseidon.ServerClient |
| PresenceCountable | Poseidon.CLI.Survey |
| preservePyml | Poseidon.CLI.Forge |
| PreservePymlOut | Poseidon.CLI.Forge |
| printDownloadProgress | Poseidon.CLI.Fetch |
| printFrequency | Poseidon.CLI.Summarise |
| printFrequencyMaybe | Poseidon.CLI.Summarise |
| printFrequencyMaybeString | Poseidon.CLI.Summarise |
| printFrequencyString | Poseidon.CLI.Summarise |
| printSNPCopyProgress | Poseidon.GenotypeData |
| printV | Poseidon.CLI.Fetch |
| printVs | Poseidon.CLI.Fetch |
| processApiResponse | Poseidon.ServerClient |
| Production | Poseidon.Utils |
| qArchive | Poseidon.ServerClient |
| qDefault | Poseidon.ServerClient |
| qPacVersion | Poseidon.ServerClient |
| readBibTeXFile | Poseidon.BibFile |
| readChronicle | Poseidon.Chronicle |
| readContributorString | Poseidon.CLI.OptparseApplicativeParsers |
| readEntitiesFromFile | Poseidon.EntityTypes |
| readEntitiesFromString | Poseidon.EntityTypes |
| readEntityInputs | Poseidon.EntityTypes |
| readJannoFile | Poseidon.Janno |
| readPlinkPopName | Poseidon.CLI.OptparseApplicativeParsers |
| readPoseidonPackage | Poseidon.Package |
| readPoseidonPackageCollection | Poseidon.Package |
| readPoseidonPackageCollectionWithSkipIndicator | Poseidon.Package |
| readSeqSourceFile | Poseidon.SequencingSource |
| readSeqSourceFileRow | Poseidon.SequencingSource |
| readServerIndInfo | Poseidon.CLI.Fetch |
| readServerPackageInfo | Poseidon.CLI.Fetch |
| recodeAlleles | Poseidon.GenotypeData |
| RectifyOptions | |
| 1 (Type/Class) | Poseidon.CLI.Rectify |
| 2 (Data Constructor) | Poseidon.CLI.Rectify |
| reduceGenotypeFilepaths | Poseidon.GenotypeData |
| ReferenceGenome | Poseidon.ColumnTypes, Poseidon.Janno |
| removeUselessSuffix | Poseidon.Janno |
| renderCsvParseError | Poseidon.Janno |
| renderJannoCompleteness | Poseidon.CLI.Survey |
| renderMismatch | Poseidon.Package |
| renderNameWithVersion | Poseidon.EntityTypes |
| renderPackageWithCompleteness | Poseidon.CLI.Survey |
| renderPoseidonException | Poseidon.Utils |
| RepoLocal | Poseidon.CLI.List |
| RepoLocationSpec | Poseidon.CLI.List |
| RepoRemote | Poseidon.CLI.List |
| reportDuplicateIndividuals | Poseidon.EntityTypes |
| resolveEntityIndices | Poseidon.EntityTypes |
| resolveUniqueEntityIndices | Poseidon.EntityTypes |
| roundTo | Poseidon.MathHelpers |
| roundToStr | Poseidon.MathHelpers |
| runChronicle | Poseidon.CLI.Chronicle |
| runFetch | Poseidon.CLI.Fetch |
| runForge | Poseidon.CLI.Forge |
| runGenoconvert | Poseidon.CLI.Genoconvert |
| runInit | Poseidon.CLI.Init |
| runJannocoalesce | Poseidon.CLI.Jannocoalesce |
| runList | Poseidon.CLI.List |
| runRectify | Poseidon.CLI.Rectify |
| runServer | Poseidon.CLI.Serve |
| runServerMainThread | Poseidon.CLI.Serve |
| runSummarise | Poseidon.CLI.Summarise |
| runSurvey | Poseidon.CLI.Survey |
| runTimetravel | Poseidon.CLI.Timetravel |
| runValidate | Poseidon.CLI.Validate |
| sAdditionalColumns | Poseidon.SequencingSource |
| Second | Poseidon.ColumnTypes, Poseidon.Janno |
| selectIndices | Poseidon.GenotypeData |
| seqSourceHeader | Poseidon.SequencingSource |
| seqSourceHeaderString | Poseidon.SequencingSource |
| seqSourceRefHashMap | Poseidon.SequencingSource |
| SeqSourceRow | |
| 1 (Type/Class) | Poseidon.SequencingSource |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| SeqSourceRows | |
| 1 (Type/Class) | Poseidon.SequencingSource |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| ServeOptions | |
| 1 (Type/Class) | Poseidon.CLI.Serve |
| 2 (Data Constructor) | Poseidon.CLI.Serve |
| ServerApiReturnType | |
| 1 (Type/Class) | Poseidon.ServerClient |
| 2 (Data Constructor) | Poseidon.ServerClient |
| ServerLog | Poseidon.Utils |
| Sex | Poseidon.Janno |
| sFastqASPERA | Poseidon.SequencingSource |
| sFastqBytes | Poseidon.SequencingSource |
| sFastqFTP | Poseidon.SequencingSource |
| sFastqMD5 | Poseidon.SequencingSource |
| sFirstPublic | Poseidon.SequencingSource |
| sfSex | Poseidon.ColumnTypes, Poseidon.Janno |
| Shotgun | Poseidon.ColumnTypes, Poseidon.Janno |
| showParsecErr | Poseidon.Utils |
| showPoseidonVersion | Poseidon.PoseidonVersion |
| SignedEntitiesList | Poseidon.EntityTypes |
| SignedEntity | Poseidon.EntityTypes |
| SimpleDate | |
| 1 (Type/Class) | Poseidon.SequencingSource |
| 2 (Data Constructor) | Poseidon.SequencingSource |
| SimpleLog | Poseidon.Utils |
| sInstrumentModel | Poseidon.SequencingSource |
| sInstrumentPlatform | Poseidon.SequencingSource |
| SixthToTenth | Poseidon.ColumnTypes, Poseidon.Janno |
| sLastUpdated | Poseidon.SequencingSource |
| sLibraryBuilt | Poseidon.SequencingSource |
| sLibraryLayout | Poseidon.SequencingSource |
| sLibraryName | Poseidon.SequencingSource |
| sLibrarySource | Poseidon.SequencingSource |
| sLibraryStrategy | Poseidon.SequencingSource |
| snapYamlChronicleVersion | Poseidon.Chronicle |
| snapYamlDescription | Poseidon.Chronicle |
| snapYamlLastModified | Poseidon.Chronicle |
| snapYamlPackages | Poseidon.Chronicle |
| snapYamlTitle | Poseidon.Chronicle |
| SNPSet1240K | Poseidon.GenotypeData |
| SNPSetHumanOrigins | Poseidon.GenotypeData |
| snpSetMerge | Poseidon.GenotypeData |
| snpSetMergeList | Poseidon.GenotypeData |
| SNPSetOther | Poseidon.GenotypeData |
| SNPSetSpec | Poseidon.GenotypeData |
| sortTupelsBySndDesc | Poseidon.CLI.Summarise |
| SpecificInd | Poseidon.EntityTypes |
| splitExtensionsOptGz | Poseidon.CLI.OptparseApplicativeParsers |
| sPoseidonID | Poseidon.SequencingSource |
| sReadCount | Poseidon.SequencingSource |
| sRunAccession | Poseidon.SequencingSource |
| SS | Poseidon.ColumnTypes, Poseidon.Janno |
| sSampleAccession | Poseidon.SequencingSource |
| sSampleAlias | Poseidon.SequencingSource |
| sSecondarySampleAccession | Poseidon.SequencingSource |
| SSFDS | Poseidon.SequencingSource |
| SSFHalf | Poseidon.SequencingSource |
| SSFLibraryBuilt | Poseidon.SequencingSource |
| SSFMinus | Poseidon.SequencingSource |
| SSFPlus | Poseidon.SequencingSource |
| SSFSS | Poseidon.SequencingSource |
| SSFUDG | Poseidon.SequencingSource |
| sStudyAccession | Poseidon.SequencingSource |
| sSubmittedFTP | Poseidon.SequencingSource |
| stdev | Poseidon.MathHelpers |
| sUDG | Poseidon.SequencingSource |
| summariseJannoRows | Poseidon.CLI.Summarise |
| SummariseOptions | |
| 1 (Type/Class) | Poseidon.CLI.Summarise |
| 2 (Data Constructor) | Poseidon.CLI.Summarise |
| sumNonMissingSNPs | Poseidon.CLI.Forge |
| SurveyOptions | |
| 1 (Type/Class) | Poseidon.CLI.Survey |
| 2 (Data Constructor) | Poseidon.CLI.Survey |
| Testing | Poseidon.Utils |
| testLog | Poseidon.Utils |
| TestMode | Poseidon.Utils |
| ThirdToFifth | Poseidon.ColumnTypes, Poseidon.Janno |
| TimetravelOptions | |
| 1 (Type/Class) | Poseidon.CLI.Timetravel |
| 2 (Data Constructor) | Poseidon.CLI.Timetravel |
| TwistAncientDNA | Poseidon.ColumnTypes, Poseidon.Janno |
| underlyingEntity | Poseidon.EntityTypes |
| UnequalLocalRemote | Poseidon.CLI.Fetch |
| uniqueNumber | Poseidon.CLI.Summarise |
| uniquePO | Poseidon.Utils |
| uniqueRO | Poseidon.Utils |
| Unknown | Poseidon.Janno |
| Unrelated | Poseidon.ColumnTypes, Poseidon.Janno |
| unzipPackage | Poseidon.CLI.Fetch |
| UpdateChron | Poseidon.CLI.Chronicle |
| updateChronicle | Poseidon.Chronicle |
| updateThreeComponentVersion | Poseidon.Version |
| usePoseidonLogger | Poseidon.Utils |
| validateGeno | Poseidon.Package |
| ValidateOptions | |
| 1 (Type/Class) | Poseidon.CLI.Validate |
| 2 (Data Constructor) | Poseidon.CLI.Validate |
| ValidatePlan | Poseidon.CLI.Validate |
| validPoseidonVersions | Poseidon.PoseidonVersion |
| ValPlanBaseDirs | Poseidon.CLI.Validate |
| ValPlanBib | Poseidon.CLI.Validate |
| ValPlanGeno | Poseidon.CLI.Validate |
| ValPlanJanno | Poseidon.CLI.Validate |
| ValPlanPoseidonYaml | Poseidon.CLI.Validate |
| ValPlanSSF | Poseidon.CLI.Validate |
| vcf2eigenstratPipe | Poseidon.GenotypeData |
| VerboseLog | Poseidon.Utils |
| VersionComponent | Poseidon.Version |
| warnSeqSourceConsistency | Poseidon.SequencingSource |
| writeBibTeXFile | Poseidon.BibFile |
| writeChronicle | Poseidon.Chronicle |
| writeJannoFile | Poseidon.Janno |
| writePoseidonPackage | Poseidon.Package |
| writeSeqSourceFile | Poseidon.SequencingSource |
| zipWithPadding | Poseidon.Package |
| _aeArchiveName | Poseidon.ServerClient |
| _aeServerURL | Poseidon.ServerClient |
| _apiMessages | Poseidon.ServerClient |
| _apiResponse | Poseidon.ServerClient |
| _archiveEnd | Poseidon.CLI.Fetch |
| _chronicleBaseDirs | Poseidon.CLI.Chronicle |
| _chronicleOperation | Poseidon.CLI.Chronicle |
| _entityInput | Poseidon.CLI.Fetch |
| _envErrorLength | Poseidon.Utils |
| _envInputPlinkMode | Poseidon.Utils |
| _envLogAction | Poseidon.Utils |
| _envTestMode | Poseidon.Utils |
| _esGenoFile | Poseidon.GenotypeData |
| _esGenoFileChkSum | Poseidon.GenotypeData |
| _esIndFile | Poseidon.GenotypeData |
| _esIndFileChkSum | Poseidon.GenotypeData |
| _esSnpFile | Poseidon.GenotypeData |
| _esSnpFileChkSum | Poseidon.GenotypeData |
| _forgeEntityInput | Poseidon.CLI.Forge |
| _forgeGenoSources | Poseidon.CLI.Forge |
| _forgeIntersect | Poseidon.CLI.Forge |
| _forgeOutFormat | Poseidon.CLI.Forge |
| _forgeOutMode | Poseidon.CLI.Forge |
| _forgeOutPacName | Poseidon.CLI.Forge |
| _forgeOutPacPath | Poseidon.CLI.Forge |
| _forgeOutputOrdered | Poseidon.CLI.Forge |
| _forgeOutputPlinkPopMode | Poseidon.CLI.Forge |
| _forgeOutZip | Poseidon.CLI.Forge |
| _forgePackageWise | Poseidon.CLI.Forge |
| _forgeSnpFile | Poseidon.CLI.Forge |
| _genoconvertGenoSources | Poseidon.CLI.Genoconvert |
| _genoconvertOnlyLatest | Poseidon.CLI.Genoconvert |
| _genoConvertOutFormat | Poseidon.CLI.Genoconvert |
| _genoconvertOutPlinkPopMode | Poseidon.CLI.Genoconvert |
| _genoconvertOutZip | Poseidon.CLI.Genoconvert |
| _genoconvertRemoveOld | Poseidon.CLI.Genoconvert |
| _genoMaybeOutPackagePath | Poseidon.CLI.Genoconvert |
| _initGenoData | Poseidon.CLI.Init |
| _initMinimal | Poseidon.CLI.Init |
| _initPacName | Poseidon.CLI.Init |
| _initPacPath | Poseidon.CLI.Init |
| _jaBaseDirs | Poseidon.CLI.Fetch |
| _jannocoalesceIdStrip | Poseidon.CLI.Jannocoalesce |
| _jannocoalesceJannoColumns | Poseidon.CLI.Jannocoalesce |
| _jannocoalesceOutSpec | Poseidon.CLI.Jannocoalesce |
| _jannocoalesceOverwriteColumns | Poseidon.CLI.Jannocoalesce |
| _jannocoalesceSource | Poseidon.CLI.Jannocoalesce |
| _jannocoalesceSourceKey | Poseidon.CLI.Jannocoalesce |
| _jannocoalesceTarget | Poseidon.CLI.Jannocoalesce |
| _jannocoalesceTargetKey | Poseidon.CLI.Jannocoalesce |
| _listListEntity | Poseidon.CLI.List |
| _listOnlyLatest | Poseidon.CLI.List |
| _listRawOutput | Poseidon.CLI.List |
| _listRepoLocation | Poseidon.CLI.List |
| _orcidChecksum | Poseidon.Contributor |
| _orcidNums | Poseidon.Contributor |
| _pacVerUpLog | Poseidon.CLI.Rectify |
| _pacVerUpVersionComponent | Poseidon.CLI.Rectify |
| _plGenoFile | Poseidon.GenotypeData |
| _plGenoFileChkSum | Poseidon.GenotypeData |
| _plIndFile | Poseidon.GenotypeData |
| _plIndFileChkSum | Poseidon.GenotypeData |
| _plSnpFile | Poseidon.GenotypeData |
| _plSnpFileChkSum | Poseidon.GenotypeData |
| _posYamlBibFile | Poseidon.Package |
| _posYamlBibFileChkSum | Poseidon.Package |
| _posYamlChangelogFile | Poseidon.Package |
| _posYamlContributor | Poseidon.Package |
| _posYamlDescription | Poseidon.Package |
| _posYamlGenotypeData | Poseidon.Package |
| _posYamlJannoFile | Poseidon.Package |
| _posYamlJannoFileChkSum | Poseidon.Package |
| _posYamlLastModified | Poseidon.Package |
| _posYamlPackageVersion | Poseidon.Package |
| _posYamlPoseidonVersion | Poseidon.Package |
| _posYamlReadmeFile | Poseidon.Package |
| _posYamlSeqSourceFile | Poseidon.Package |
| _posYamlSeqSourceFileChkSum | Poseidon.Package |
| _posYamlTitle | Poseidon.Package |
| _readOptFullGeno | Poseidon.Package |
| _readOptGenoCheck | Poseidon.Package |
| _readOptIgnoreChecksums | Poseidon.Package |
| _readOptIgnoreGeno | Poseidon.Package |
| _readOptIgnorePosVersion | Poseidon.Package |
| _readOptOnlyLatest | Poseidon.Package |
| _rectifyBaseDirs | Poseidon.CLI.Rectify |
| _rectifyChecksumBib | Poseidon.CLI.Rectify |
| _rectifyChecksumGeno | Poseidon.CLI.Rectify |
| _rectifyChecksumJanno | Poseidon.CLI.Rectify |
| _rectifyChecksums | Poseidon.CLI.Rectify |
| _rectifyChecksumSSF | Poseidon.CLI.Rectify |
| _rectifyIgnorePoseidonVersion | Poseidon.CLI.Rectify |
| _rectifyNewContributors | Poseidon.CLI.Rectify |
| _rectifyOnlyLatest | Poseidon.CLI.Rectify |
| _rectifyPackageVersionUpdate | Poseidon.CLI.Rectify |
| _rectifyPoseidonVersion | Poseidon.CLI.Rectify |
| _summariseBaseDirs | Poseidon.CLI.Summarise |
| _summariseRawOutput | Poseidon.CLI.Summarise |
| _surveyBaseDirs | Poseidon.CLI.Survey |
| _surveyOnlyLatest | Poseidon.CLI.Survey |
| _surveyRawOutput | Poseidon.CLI.Survey |
| _timetravelBaseDirs | Poseidon.CLI.Timetravel |
| _timetravelChronicleFile | Poseidon.CLI.Timetravel |
| _timetravelSourceDir | Poseidon.CLI.Timetravel |
| _validateNoExitCode | Poseidon.CLI.Validate |
| _validateOnlyLatest | Poseidon.CLI.Validate |
| _validatePlan | Poseidon.CLI.Validate |
| _valPlanBaseDirs | Poseidon.CLI.Validate |
| _valPlanFullGeno | Poseidon.CLI.Validate |
| _valPlanIgnoreChecksums | Poseidon.CLI.Validate |
| _valPlanIgnoreDuplicates | Poseidon.CLI.Validate |
| _valPlanIgnoreGeno | Poseidon.CLI.Validate |
| _valPlanIgnorePosVersion | Poseidon.CLI.Validate |
| _vcfGenoFile | Poseidon.GenotypeData |
| _vcfGenoFileChkSum | Poseidon.GenotypeData |